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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs3839271 chr5:156019197 A/AGAG 3.95E-6 406 16.6 14.12 11.63 KM Plot
LGG rs3840165 chr6:36007247 GGT/G 1.47E-9 401 15.6 15.13 6.15 KM Plot
LGG rs3848653 chr19:16800069 C/T 4.05E-7 406 15.88 12.87 3.58 KM Plot
LGG rs3851975 chr2:202086400 T/G 1.85E-6 405 15.17 16.45 4.45 KM Plot
LGG rs3852412 chr10:64050288 C/T 0.000116 399 12.17 15.7 15.83 KM Plot
LGG rs3864794 chr10:64041956 A/C 8.17E-5 402 12.17 15.7 15.78 KM Plot
LGG rs3893749 chr16:67533298 A/G 9.4E-6 406 15.2 15.25 19.2 KM Plot
LGG rs3902162 chr10:64041817 C/T 0.000199 398 12.1 15.63 15.78 KM Plot
LGG rs3922896 chr3:38885497 G/T 4.34E-5 407 15.17 16.37 11.63 KM Plot
LGG rs3924660 chr10:4930006 A/G 0.000121 407 18.27 15.52 15.18 KM Plot
LGG rs3924662 chr10:4929456 T/C 0.000121 407 18.27 15.52 15.18 KM Plot
LGG rs3927343 chr11:62011742 C/A 0.000202 405 15.17 23.43 4.68 KM Plot
LGG rs3947399 chr5:93996886 A/G 4.32E-5 407 14.78 17.63 9.8 KM Plot
LGG rs396148 chr19:44494548 A/T 0.000212 407 15.73 14.92 14.85 KM Plot
LGG rs400303 chr5:156038765 A/T 0.000123 407 16.67 14.45 10.7 KM Plot